That looks MUCH better! I'm not sure if you're using PEQ, but I would set it to 90 (or maybe the highest is 80?) and raise it as much as you can (I think it's +3db), and play with the width setting to see how much you need to level out. Also - I'd lower your crossover point to be rid of that 270hz peak it's making. This will also let the sub focus more on those lower regions it's better with!
Not sure if any of that helps, or if you've done that already! But upon quick glance, that's what I'd suggest!

Once all that is leveled out - playing with your phase (even if you can't really hear a difference) is really what's going to integrate them in 100%