Possibly a bigger issue than air flow, unless your amp is class A or runs very hot, is the type of transformer inside. If it is a "doughnut" style lying flat inside the chassis then stacking is not a good idea. Think of a 6' long javelin running through the center of the hole. Anything above or below that can possibly be influenced by the magnetic field generated. Even shielded there is still a spike up and down, although abbreviated somewhat.
If it uses a standard transformer then the issue is not so pertinant and heat exchange becomes more so.
ENjoy,
Bob