You cannot use a regular Y-cable to combine 2 RCA connections into one.  There are cables out there you can use, but you need more than that in my opinion.  Anti-Mode sells a cable with this feature for about $100.00.
I run a sub for music and always will.  The reason is that bass frequencies fall victim to the room and require some sort of EQ to provide a flat frequency response below 100Hz.  As such, you should be running some sort of EQ device such as a Velodyne SMS-1 or a Anti-Mode.  The bonus to running one of these devices is that it's not only and EQ device, but also combines stereo RCA inputs into a single mono output for the sub.  
What sub are you using?  Does it have a single mono RCA input?
For the record, I run dual subs off my Rogue preamp's secondary outputs.  I use an SMS-1 to EQ my subs.  I also use FMOD filters to high-pass my main speakers.