The S Master Pro's do have a digital direct function.
My impression was that the Sonys which had noise problems had no more noise than any other masssssss-fi product, and that the issue was being examined by people with their ears to their speakers with the volume of the amp at zero attenuation. --Not exactly a real world scenario. Apparently, one model in particular, the 3000, was notorious, and that this was fixed with subsequent shipments.
The real issues with noise and digital amps have everything to do with proper power conditioning, and isolation. Digital amps are inherently sensitive to RFI in the line, and produce lots of it, themselves. Any digital amp I have tried, The SonyAVD-S500, Panasonic SA45, Carver ZR, the PowerWave, all exhibited a very noticeable increase in resolution, and almost total loss of RF type noise when 1) used with an upgrade Power Cord and plugged into their own outlet within a high quality power conditioner. The Panasonic seems particularly sensitive to AC. ONEAC's work perfectly. Key is getting rid of the noise, and out comes the inner detail and delicate nature of digital amps. 2) isolation; digital amps can produce their own jitter. Good isolation efforts yield further obvious results. I am using Final Labs bearings, and to my amazement, the quality of the sound jacked up yet again, another good increment.