Jon,
You made a good point, which I failed to note. If you pull the "wrong" pair of tubes you create a, for lack of a better term, a pseudo single-ended amp with a transformer designed for push pull operation. There would be no current flowing through half of the output transformer's primary winding. Another reason not to operate with 2 tubes per channel.
Truthfully, rlw3, if you don't need the power and you would like to use less output tubes, consider the RM-10. I have an RM-10, in addition to my Rm-9 MK II, and it is a real joy.