In general, sanding the larger surface to make it flush with low bit is a fool's errand unless you can keep it flat somehow. There are ways, but it's a process to get it right. When you drop a straight edge on side is it flat? How much does the low area dip and over what distance? Perhaps there's another way to address, like a radius? Polyester filler may work but it's not great for sculpting a profile. Photo would be helpful.