The easiest way to integrate subs seamlessly is with a somewhat higher crossover frequency, say 80-100 Hz & 24 dB octave slopes, and some sort of EQ/DSP capability on
only the subs. I use REW and a DSPeaker-Antimode 2.0 Dual Core 2.0, but mini-DSP would work as well and be cheaper.
The benefits are that you can: 1) equalize for room mode peaks up to 250 Hz or so; 2) add a house curve with a
very modest bass boost for naturalness; 3) minimize bass distortion on the main panels without harming of the Maggie's great bass quality; 4) not add any electronic colorations to the panels that would color the sound or make less transparent.
Using REW and a cheap USB mic, you can also move the subs and see where the optimum placement is within the constraints of your listening room before you employ any EQ to the subs. The end result with a pair of 3.6s and some big subs could look something like this:

You could also skip the DSP/EQ and just use REW to measure location results. Results wouldn't be anywhere near as good, but still much better than set-up by ear alone and it would be way less time consuming to find the best sound.