Hi Jim, the 2x8 board has 5 on each input channel, and 5 on each output channel. The newer 8x8 board has 6 on each I believe although I've not used it myself.
The miniAMP is not plug and play with the 2x8 board, it's really designed to work with the small boards. On the 2x8 board only one (stereo) channel is brought out on the piggy back plugs, which is intended for the miniDIGI digital out. I don't know what would be involved in connecting a miniAMP to it. If you wanted more channels you'd have to wire directly into the board I believe. I do have a miniAMP with the small board here but haven't spent much time with it other than to confirm that it works.
I don't use the REW integration myself as I prefer to do it manually.
Hope that helps 
Thank you, John, very helpful. I'd love to run the miniAMP off of the miniDSP 2x8 or 8x8 for 4 channels in my active 3-way system - I'll post on miniDSP's forum to see if this is possible.
Thanks for the clarification on the bands. To verify further (for my specific 3-way active system), I believe this means that assuming 2 channels (left and right) for the bass amps / speakers, there are 5 bands for that frequency range (~20hz to 300hz) for each of those two channels? And then, for the mid-range, 2 more channels of output (left and right) with an additional 5 bands of PEQ for each channel? Same for the final two channels for the tweeters?
Also, the 5 PEQ bands on the input channels...are these over PEQ adjustments that can be made across the frequency spectrum, in addition to the PEQs done on the individual output channels?
Thanks again, John.
-Jim