It is late, but I will chime in tomorrow about placement information about Mains and Subs, that is critical to getting the best "musical" response.
There are far too many set up and placement errors commited, when adding a sub into the system.
Let me get some "shut eye"
and I'll try to cover some of them. (that is if someone doesn't post them before I wake up
)

What a great nap that was. What was it about a week?
In any event, my advice to those who use a sub with their mains is this:
Integration - many sonic problems are realized because we try and "integrate" our subs with our mains with too much "overlap" of the frequency band. If we have small woofers (in the mains) and larger woofers (in the subs) producing the same frequency, then we can have problems.
Those problems are many:
a) the overlapping frequency will create a peak or rise in SPL
b) the two drivers will not be exactly 'in phase' and we have rubbery, or wooly bass
c) the two drivers are "in phase" but not in the same plane, which causes them to still arrive at the listener and not be "phase coherent".
The solution is to:
1) set the crossover to minimize the overlapping frequencies
2) Make sure the phasing is correct and if your crossover has a phase dial, spend some time adjusting this to achive the best result
3) Arrange your sub(s) in an ITU (a semi-circle where all speakers have their acoustic centers the exact same distance from the listener
Now these tips are not as important for HT as they are for music. In HT, much of the duties for the sub are simply to add "sonic impact" to various "foley" and effects, and the subtlties of detail and such are less important. This will aloow you to place the SUB in the corner or out of ITU config, simply to promote additional "room gain".
And I might add there are specific devices and programs (DEQX, TACT, and some other room and speaker equalization systems) that will allow the sub to be placed out of the ITU place, and correct for arrival time, and phase coherncy via signal manipulation and timing.
But, in general, if you want the most detail and clean bass, you will need to be aware of reducing the problems of "integrating" the drivers properly.