I've used the stock EH EL34s, the EH 6CA7s and the SED (from the old Svetlana factory) Winged C EL34s in the SE9 and prefer the SEDs. They're smoother, most musical, at least in my room.
I also swapped out the other stock tubes, replacing the 12AX7s with a pair of Mullard long plates and the generic Chinese 5AR4 with a Valvo 5AR4, made in Holland. If you haven't swapped those, you should think about it. The 5AR4s seem to last forever, and the Valvo seemed to make more difference in the sound than anything else, really smoothing the sound of the SE9, providing a lot of the "single-ended tube" sound.