Steve,
You are absolutely correct and not having the metal shielding was, for a long time, what dissuaded me from undertaking this project.  I then decided to just try it out and see what the affect might be.  The amp has been on now for about 72 hours and to my ears, I cannot discern any different sonic effect whatsoever, negative or positive.  I can say, however, that it runs much cooler.  It does have two additional rows of vents compared to the metal top and I was ready to slap on a super quiet 12v fan if that became necessary.  Fortunately, I have nothing critical in the vicinity of the amp so perhaps that has helped. 
George