My guess is that the "ports" help the bass by effectively increasing the path length from rear of woofer to front of woofer, and I think they will cause one narrow-band "glitch" and one broad-band "trend" in the frequency response curve. Considering that the woofer cones are almost as wide as the front baffle, the increase in path length may well add 4 dB more bass headroom. The system's DSP processing will take care of the glitch and the trend.
The ports will also modify the directivity below the crossover point, acting narrower virtual sources than the actual woofer cone. This may factor into what Clayton is doing as well.