Equalizers? what for?
If you want to constantly adjust and tweak your sound, get crossovers, eq's, and the like... (I agree that the tweeters should not be in the dash but, you can experiment with this during the install for what you like best)
If you want good sound, get the Nak CD400, Some nice separates that you like and have heard for the front doors and some OK full range speakers for the back....
If Q-logic makes a sub-box for your car, it will integrate very well and not take up much space. An 8 or 10" sub will be plenty for that car unless you want to win SPL competitions.
As for amps, I've used MTX, Alpine, and Kenwood. I couldn't hear a difference between them.... I'm sure any mid-level 200-watt 4-channel amp would be plenty for the 2 fronts, and 2 rears. Fade to the front a bit and you will get better imaging and detail. The rear deck is good for some fill but, I've found putting 2way's there are very distracting. 6x9's sound bad to me.
If you can't do the q-logic prefab box, a normal enclosure that's easy to remove would be my second choice. Having someone make a custom fiberglass box would be over $1200 if they did it right. (i.e. considered volume requirements, driver placement requirements, type of driver, etc.)
Using a little soundproofing in the doors is a good idea but, don't expect miracles. I thought it would make a big difference and it didn't.
Try calling Crutchfield (
www.crutchfield.com) to see what they recommend. I've had good luck with their phone sales. They can recommend installers and such. Oh, buy the XTC foam baffles for your speakers. They're cheap and effective.
That's about all I can think to tell you. If it were me, I'd install it all myself because I'm the only person I trust for that kind of thing. However, if you can sacrafice the CD400 and get a $200 HU you like, I would imagine you could do this for within your price range.
By the way, I bought Boston Acoustic's RC620's for my main speakers in my last car. They have a solid midrange and midbass and smooth, sweet highs from a 1" silk dome tweeter. I heard these at a local shop before I bought them on ebay. ($300+ vs. $200 shipped, new)
I'd say the front speakers are the most important thing you like. Whatever you buy will sound different in the door than it does on a display.... but, it'll have the same character. (except Polk's... they just suck in a car but, sound great on a board)
OK, now that's REALLY it....