The Flat packs are fantastic! Peter also has an amazing video linked in the thread about his assembly process, building mine was a great learning experience.
Originally, the only upgrade was going with a Copper Bypass cap instead of a Sonicap, but that has since been made the standard option.
Beyond that, the only other upgrades I've seen people mention are Foil Inductors, Path resistors and the most expensive/physically large upgrade, being going with Danny's all-Copper caps, including one that looks about as big as a can of soda..
I plan to go the foil inductor/Path resistor route, but I personally can't really justify the cost of the all Copper caps route, beyond that, i haven't seen too many other options that people are going with, but even the stock config is sure to beat just about any studio monitors well beyond their price range.