As a wild guess the folders are too big for the RAM memory to keep the old one and the new one.
So the cache is discarding the old one as soon as the new one is building and gets bigger than the RAM can hold (both). So naturally it is going to dump the previous one to handle the new one.
With five terabytes of data, I can see it happening..
If you had only two Terabytes I bet it would stop..
So either you need more RAM, in your current player, or a new player with more RAM.
I have no idea if you can even add more?
Also, if there is enough, perhaps something else is being done, some junk is being saved endlessly that has caused your machine to stop saving folders so it can save the useless junk? Computers used to do that all the time and need a 'cleaning app' to fix it.