Take a measurement without the subwoofers to show what the speakers in the room are doing.
Or maybe a variation of the Sumiko Master Set Speaker Setup, take a measurement of one speaker at a time.
While you are contemplating solutions, Audio Check has a complete range of free online test tools or pay $5 to download uncompressed .wav files for every test.
https://www.audiocheck.net/The sub tests you would be interested in are:
Low Frequency Response and Subwoofer Audio Test (10-200 Hz)
Subwoofer Kick Test
Subwoofer Midrange Frequency Test
Low Frequency Sound Localization and Subwoofer Imaging Test
Pure (Sine) Tones
Full Sine Sweep (20-20,000 Hz)
Low End Sine Sweep (20-200 Hz)
Perceptual Sine Sweep (20-20,000 Hz)
Sine Bursts (20-200 Hz)
Noises
White Noise
Pink Noise
Brown (Red) Noise
Blue (Azure) Noise
Violet (Purple) Noise
Grey (Perceptual) Noise
Pure Tone Generators
Single Sine Tone Generator
Dual Sine Tone Generator
Sweep Tone Generator