As part of a process of elimination, try swapping the inputs, so that left source output goes into right amp input and vice a versa with the other channel.
If the problem is still in your right channel, you've at least ruled out the source. If it's now in the left, you're closer to locating the prob.,somewhere in the source.
Does it cause a distinct pop in the speakers when it happens, or is it a sort of quiet drop away and return?