To Dynky and rhassle,
Just wanted to say thank you. You were both right! Had a chance to exchange a few Emails with Mike Pickett at Bryston this afternoon and it turns out that the crossover settings and the DSP modes are, indeed, tied together in the SP-3. This is why, as you both pointed out, changing the crossover settings while operating in 2-Channel Bypass Mode had no effect. It's also, why setting the speaker size to small had no effect in 2-Channel Bypass Mode.
The work around is to switch to Stereo Mode (DSP). This will allow the crossover settings to work, but only if the front speakers are set to "Small". If the speakers are set to "Large", the crossover setting will have no effect.
Anyway, all sorted.
Thank you gentlemen, your replies were greatly appreciated.