The way I have mine connect is as follows: LFE out of preamp to theater input for home theater use, for 2ch I simply run the left out to one sub and the right to the other sub. This works great because when you are using it for home theater use, you can control the output thru your reciever. It took me some time to set them up but it's well worth it. The way I just described works great, you just need to run two sets of cable. BTW the sub allows to have both connections connected, but will only use one at a time.
Yea, I would do that, however if the theater input is still working by THX standards (Mike, can you confirm this?), then it automatically curbs input lower than 35Hz, in an effort to maximize SPL. I believe that would mean that the low frequency content in movies is not being played per the movies (and receivers) direction. m_l, you might try connecting connecting the theater input into one of the L or R channels, and seeing if you hear a difference during a movie (you would also probably set the crossover points to max).
Anyway, this is the question that I'm trying to confirm: does the theater input to the sub have any non-defeatable high pass filters, and if so, how do I connect my sub to both a 2 channel and HT setup simultaneously without losing low frequency information in either.